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      "title": "Atlas Alignment Lookup",
      "topics": [
        "atlas_alignment"
      ]
    },
    {
      "page": "atlas_artifacts",
      "title": "Get Atlas Artifact Metadata",
      "topics": [
        "atlas_artifacts"
      ]
    },
    {
      "page": "atlas_citations",
      "title": "Bibliographic References for an Atlas or Template",
      "topics": [
        "atlas_citations",
        "template_citations"
      ]
    },
    {
      "page": "atlas_connectivity",
      "title": "Compute Connectivity Matrix from Atlas Parcellations",
      "topics": [
        "atlas_connectivity"
      ]
    },
    {
      "page": "atlas_coord_space",
      "title": "Atlas Coordinate-Space Convenience Accessor",
      "topics": [
        "atlas_coord_space"
      ]
    },
    {
      "page": "atlas_family",
      "title": "Atlas Family Convenience Accessor",
      "topics": [
        "atlas_family"
      ]
    },
    {
      "page": "atlas_graph",
      "title": "Compute Parcel Adjacency Graph from an Atlas",
      "topics": [
        "atlas_graph"
      ]
    },
    {
      "page": "atlas_hierarchy",
      "title": "Atlas Hierarchy",
      "topics": [
        "atlas_hierarchy"
      ]
    },
    {
      "page": "atlas_history",
      "title": "Get Atlas Processing History",
      "topics": [
        "atlas_history"
      ]
    },
    {
      "page": "atlas_metadata",
      "title": "Atlas and Template Metadata",
      "topics": [
        "atlas_metadata",
        "atlas_metadata.atlas",
        "atlas_metadata.default",
        "atlas_metadata.wang_prob_volumes",
        "print.NeuroResourceMetadata",
        "template_metadata",
        "validate_resource_metadata"
      ]
    },
    {
      "page": "atlas_overlap",
      "title": "Cross-Atlas Overlap Analysis",
      "topics": [
        "atlas_overlap"
      ]
    },
    {
      "page": "atlas_provenance",
      "title": "Atlas Provenance Accessors",
      "topics": [
        "atlas_artifacts.atlas",
        "atlas_artifacts.default",
        "atlas_history.atlas",
        "atlas_history.default",
        "atlas_provenance",
        "atlas_provenance.atlas",
        "atlas_provenance.default"
      ]
    },
    {
      "page": "atlas_ref",
      "title": "Atlas Reference Accessor",
      "topics": [
        "atlas_ref",
        "atlas_ref.atlas",
        "atlas_ref.default"
      ]
    },
    {
      "page": "atlas_roi_colors",
      "title": "Assign optimal colours to atlas regions",
      "topics": [
        "atlas_roi_colors"
      ]
    },
    {
      "page": "atlas_space",
      "title": "Atlas Template-Space Convenience Accessor",
      "topics": [
        "atlas_space"
      ]
    },
    {
      "page": "atlas_transform_manifest",
      "title": "Atlas Transform Manifest",
      "topics": [
        "atlas_transform_manifest"
      ]
    },
    {
      "page": "atlas_transform_plan",
      "title": "Plan a Transform Between Spaces",
      "topics": [
        "atlas_transform_plan"
      ]
    },
    {
      "page": "batch_reduce",
      "title": "Batch Reduce Multiple Volumes by an Atlas",
      "topics": [
        "batch_reduce"
      ]
    },
    {
      "page": "brainnetome_labels",
      "title": "Brainnetome Atlas Label Table",
      "topics": [
        "brainnetome_labels"
      ]
    },
    {
      "page": "build_brain_polygon_data",
      "title": "Build brain polygon render data for a surface atlas",
      "topics": [
        "build_brain_polygon_data"
      ]
    },
    {
      "page": "build_cluster_explorer_data",
      "title": "Build Cluster Explorer Data",
      "topics": [
        "build_cluster_explorer_data"
      ]
    },
    {
      "page": "build_conflict_edges",
      "title": "Build slice-aware conflict edges between ROIs",
      "topics": [
        "build_conflict_edges"
      ]
    },
    {
      "page": "build_surface_polygon_data",
      "title": "Build Surface Polygon Data for Rendering",
      "topics": [
        "build_surface_polygon_data"
      ]
    },
    {
      "page": "check_templateflow",
      "title": "Check TemplateFlow Installation Status",
      "topics": [
        "check_templateflow"
      ]
    },
    {
      "page": "clear_templateflow_cache",
      "title": "Clear neuroatlas TemplateFlow Cache",
      "topics": [
        "clear_templateflow_cache"
      ]
    },
    {
      "page": "clear_transform_cache",
      "title": "Clear Verified Transform Artifacts",
      "topics": [
        "clear_transform_cache"
      ]
    },
    {
      "page": "cluster_explorer",
      "title": "Launch Cluster Explorer Shiny App",
      "topics": [
        "cluster_explorer"
      ]
    },
    {
      "page": "coord_spaces",
      "title": "Standard Coordinate Space Identifiers",
      "topics": [
        "coord_spaces"
      ]
    },
    {
      "page": "coordinate_spaces",
      "title": "Coordinate Space Transforms for Neuroimaging Templates",
      "topics": [
        "coordinate_spaces"
      ]
    },
    {
      "page": "create_templateflow",
      "title": "Create a TemplateFlow Interface Object",
      "topics": [
        "create_templateflow"
      ]
    },
    {
      "page": "dilate_atlas",
      "title": "Dilate Atlas Parcellation Boundaries",
      "topics": [
        "dilate_atlas"
      ]
    },
    {
      "page": "filter_atlas",
      "title": "Filter Atlas by ROI Attributes",
      "topics": [
        "filter_atlas",
        "filter_atlas.atlas"
      ]
    },
    {
      "page": "fsaverage",
      "title": "Surface geometry for the fsaverage6 atlas",
      "topics": [
        "fsaverage"
      ]
    },
    {
      "page": "get_aseg_atlas",
      "title": "Get the FreeSurfer Subcortical Atlas (ASEG)",
      "topics": [
        "get_aseg_atlas"
      ]
    },
    {
      "page": "get_atlas",
      "title": "Load an Atlas by Registered ID",
      "topics": [
        "get_atlas"
      ]
    },
    {
      "page": "get_brainnetome_atlas",
      "title": "Load Brainnetome 246-Region Atlas",
      "topics": [
        "get_brainnetome_atlas"
      ]
    },
    {
      "page": "get_cifti_transform",
      "title": "Bind Qualified Cortical Operators to a CIFTI Layout",
      "topics": [
        "get_cifti_transform"
      ]
    },
    {
      "page": "get_fsl_atlas",
      "title": "FSL Atlas Loaders",
      "topics": [
        "get_fsl_atlas"
      ]
    },
    {
      "page": "get_ggseg_atlas",
      "title": "Get ggseg-Compatible Schaefer Atlas",
      "topics": [
        "get_ggseg_atlas"
      ]
    },
    {
      "page": "get_glasser_atlas",
      "title": "Load Glasser Atlas",
      "topics": [
        "get_glasser_atlas"
      ]
    },
    {
      "page": "get_harvard_oxford_atlas",
      "title": "Load a Harvard-Oxford Atlas",
      "topics": [
        "get_harvard_oxford_atlas",
        "get_harvard_oxford_cortical_atlas",
        "get_harvard_oxford_cortical_subcortical_atlas",
        "get_harvard_oxford_subcortical_atlas"
      ]
    },
    {
      "page": "get_hcpex_atlas",
      "title": "Load the Extended HCP Atlas (HCPex)",
      "topics": [
        "get_hcpex_atlas"
      ]
    },
    {
      "page": "get_hipp_atlas",
      "title": "Extract Hippocampal Parcellation",
      "topics": [
        "get_hipp_atlas"
      ]
    },
    {
      "page": "get_julich_brain_atlas",
      "title": "Load a Julich-Brain FSL Atlas",
      "topics": [
        "get_julich_brain_atlas"
      ]
    },
    {
      "page": "get_olsen_mtl",
      "title": "Load Olsen MTL Atlas",
      "topics": [
        "get_olsen_mtl"
      ]
    },
    {
      "page": "get_roi",
      "title": "Extract a region of interest (ROI) from an atlas",
      "topics": [
        "get_roi",
        "get_roi.atlas"
      ]
    },
    {
      "page": "get_roi-surfatlas",
      "title": "Extract regions of interest from a surface atlas",
      "topics": [
        "get_roi.surfatlas"
      ]
    },
    {
      "page": "get_schaefer_atlas",
      "title": "Load Schaefer Brain Parcellation Atlas",
      "topics": [
        "get_schaefer_atlas",
        "sy_1000_17",
        "sy_1000_7",
        "sy_100_17",
        "sy_100_7",
        "sy_200_17",
        "sy_200_7",
        "sy_300_17",
        "sy_300_7",
        "sy_400_17",
        "sy_400_7",
        "sy_500_17",
        "sy_500_7",
        "sy_600_17",
        "sy_600_7",
        "sy_700_17",
        "sy_700_7",
        "sy_800_17",
        "sy_800_7",
        "sy_900_17",
        "sy_900_7"
      ]
    },
    {
      "page": "get_schaefer_surfatlas",
      "title": "Load Surface-Based Schaefer Atlas",
      "topics": [
        "get_schaefer_surfatlas"
      ]
    },
    {
      "page": "get_space_transform",
      "title": "Get Transform Matrix Between Coordinate Spaces",
      "topics": [
        "get_space_transform"
      ]
    },
    {
      "page": "get_subcortical_atlas",
      "title": "Load harmonized subcortical atlases via TemplateFlow",
      "topics": [
        "get_subcortical_atlas"
      ]
    },
    {
      "page": "get_surface_coordinate_space",
      "title": "Get Coordinate Space for a Surface Template",
      "topics": [
        "get_surface_coordinate_space"
      ]
    },
    {
      "page": "get_surface_geometry",
      "title": "Fetch Exact Pinned Surface Registration Geometry",
      "topics": [
        "get_surface_geometry"
      ]
    },
    {
      "page": "get_surface_projection",
      "title": "Resolve a Qualified Population Volume-to-Cortex Projection",
      "topics": [
        "get_surface_projection"
      ]
    },
    {
      "page": "get_surface_transform",
      "title": "Build or Load a Directed Surface Transform",
      "topics": [
        "get_surface_transform"
      ]
    },
    {
      "page": "get_template",
      "title": "Fetch a Template from TemplateFlow",
      "topics": [
        "get_surface_template",
        "get_template"
      ]
    },
    {
      "page": "get_template_transform",
      "title": "Resolve and Load a Verified Template Transform",
      "topics": [
        "get_template_transform"
      ]
    },
    {
      "page": "get_visfatlas",
      "title": "visfAtlas Probabilistic Functional Visual Atlas (volume)",
      "topics": [
        "get_visfatlas"
      ]
    },
    {
      "page": "get_visual_atlas",
      "title": "Early Visual Cortex Atlas (V1-V5, cytoarchitectonic)",
      "topics": [
        "get_visual_atlas"
      ]
    },
    {
      "page": "get_wang_atlas",
      "title": "Wang (2015) Probabilistic Visual Topography Atlas",
      "topics": [
        "get_wang_atlas"
      ]
    },
    {
      "page": "get_wang_prob_atlas",
      "title": "Wang (2015) Full Per-Area Probability Volumes (Princeton ProbAtlas_v4)",
      "topics": [
        "get_wang_prob_atlas",
        "print.wang_prob_paths"
      ]
    },
    {
      "page": "ggseg_schaefer",
      "title": "Create Interactive Schaefer Atlas Visualization",
      "topics": [
        "ggseg_schaefer"
      ]
    },
    {
      "page": "glasser_surf",
      "title": "Glasser Surface Atlas (fsaverage)",
      "topics": [
        "glasser_surf"
      ]
    },
    {
      "page": "infer_design_var_type",
      "title": "Infer Design Variable Type",
      "topics": [
        "infer_design_var_type"
      ]
    },
    {
      "page": "install_templateflow",
      "title": "Install Templateflow (DEPRECATED)",
      "topics": [
        "install_templateflow"
      ]
    },
    {
      "page": "launch_cluster_explorer",
      "title": "Launch Cluster Explorer in Interactive Session",
      "topics": [
        "launch_cluster_explorer"
      ]
    },
    {
      "page": "list_atlases",
      "title": "List Registered Atlases",
      "topics": [
        "list_atlases"
      ]
    },
    {
      "page": "load_surface_template",
      "title": "Load a surface template as a neurosurf geometry",
      "topics": [
        "load_surface_template"
      ]
    },
    {
      "page": "map_atlas",
      "title": "Map values to an atlas",
      "topics": [
        "map_atlas",
        "map_atlas.atlas",
        "map_atlas.glasser",
        "map_atlas.schaefer"
      ]
    },
    {
      "page": "map_to_schaefer",
      "title": "Map Values to Schaefer Atlas Format",
      "topics": [
        "map_to_schaefer"
      ]
    },
    {
      "page": "merge_atlases",
      "title": "Merge Two Brain Atlases",
      "topics": [
        "merge_atlases"
      ]
    },
    {
      "page": "MNI152_to_MNI305",
      "title": "MNI152 to MNI305 Affine Transform Matrix",
      "topics": [
        "MNI152_to_MNI305"
      ]
    },
    {
      "page": "MNI305_to_MNI152",
      "title": "MNI305 to MNI152 Affine Transform Matrix",
      "topics": [
        "MNI305_to_MNI152"
      ]
    },
    {
      "page": "needs_coord_transform",
      "title": "Check if a Coordinate Transform is Needed",
      "topics": [
        "needs_coord_transform"
      ]
    },
    {
      "page": "needs_template_warp",
      "title": "Check if a Nonlinear Template Warp is Needed",
      "topics": [
        "needs_template_warp"
      ]
    },
    {
      "page": "needs_transform",
      "title": "Check if Transform is Needed Between Spaces",
      "topics": [
        "needs_transform"
      ]
    },
    {
      "page": "network_anchor_hues",
      "title": "Assign harmonic anchor hues to networks",
      "topics": [
        "network_anchor_hues"
      ]
    },
    {
      "page": "new_atlas_ref",
      "title": "Atlas Reference Metadata",
      "topics": [
        "new_atlas_ref"
      ]
    },
    {
      "page": "olsen_mtl",
      "title": "Olsen Medial Temporal Lobe Atlas",
      "topics": [
        "olsen_mtl"
      ]
    },
    {
      "page": "parcel_data",
      "title": "Parcel-Level Data Container",
      "topics": [
        "parcel_data"
      ]
    },
    {
      "page": "parcel_values",
      "title": "Extract Parcel Values Aligned to an Atlas",
      "topics": [
        "parcel_values"
      ]
    },
    {
      "page": "parcel_volume",
      "title": "Expand Parcel Values to a Volumetric Atlas",
      "topics": [
        "parcel_volume"
      ]
    },
    {
      "page": "plot_brain",
      "title": "Plot Brain Surface Atlas",
      "topics": [
        "plot_brain"
      ]
    },
    {
      "page": "plot_brain_grid",
      "title": "Multi-panel Brain Plot Grid",
      "topics": [
        "plot_brain_grid"
      ]
    },
    {
      "page": "plot_glasser",
      "title": "Plot Glasser Atlas Values",
      "topics": [
        "plot_glasser"
      ]
    },
    {
      "page": "plot-methods",
      "title": "Plot Glasser Atlas",
      "topics": [
        "plot-methods",
        "plot.atlas",
        "plot.glasser",
        "plot.surfatlas"
      ]
    },
    {
      "page": "print-methods",
      "title": "Print Methods for neuroatlas Objects",
      "topics": [
        "print-methods",
        "print.atlas",
        "print.atlas_provenance",
        "print.glasser",
        "print.schaefer"
      ]
    },
    {
      "page": "print.atlas_alignment",
      "title": "Print Method for Atlas Alignment Results",
      "topics": [
        "print.atlas_alignment"
      ]
    },
    {
      "page": "print.atlas_ref",
      "title": "Print Method for Atlas References",
      "topics": [
        "print.atlas_ref"
      ]
    },
    {
      "page": "print.atlas_transform_plan",
      "title": "Print Method for Transform Plans",
      "topics": [
        "print.atlas_transform_plan"
      ]
    },
    {
      "page": "print.templateflow",
      "title": "Print a TemplateFlow Object",
      "topics": [
        "print.templateflow"
      ]
    },
    {
      "page": "project_cluster_overlay",
      "title": "Project a Volume onto a Surface Atlas",
      "topics": [
        "project_cluster_overlay"
      ]
    },
    {
      "page": "project_surface_view",
      "title": "Project Surface Vertices to a Canonical 2D View",
      "topics": [
        "project_surface_view"
      ]
    },
    {
      "page": "projection_diagnostics",
      "title": "Inspect Coverage and Label Loss in a Cortical Projection",
      "topics": [
        "projection_diagnostics"
      ]
    },
    {
      "page": "query_coord",
      "title": "Query Atlas Labels by Coordinate",
      "topics": [
        "query_coord",
        "query_vox"
      ]
    },
    {
      "page": "query_point",
      "title": "Look Up Atlas Regions at MNI Coordinates",
      "topics": [
        "query_point"
      ]
    },
    {
      "page": "read_cifti",
      "title": "Read CIFTI-2 Dense Scalar or Label Maps",
      "topics": [
        "read_cifti"
      ]
    },
    {
      "page": "read_parcel_data",
      "title": "Read a `parcel_data` Object from Disk",
      "topics": [
        "read_parcel_data"
      ]
    },
    {
      "page": "reduce_atlas",
      "title": "Reduce a NeuroVol or NeuroVec by an Atlas",
      "topics": [
        "reduce_atlas",
        "reduce_atlas.atlas"
      ]
    },
    {
      "page": "reduce_atlas_vec",
      "title": "Reduce a NeuroVec by an Atlas to a ClusteredNeuroVec",
      "topics": [
        "reduce_atlas_vec",
        "reduce_atlas_vec.atlas"
      ]
    },
    {
      "page": "replace_cifti_values",
      "title": "Replace Values Without Changing CIFTI Brain Models",
      "topics": [
        "replace_cifti_values"
      ]
    },
    {
      "page": "resample",
      "title": "Resample Volume to New Space",
      "topics": [
        "resample"
      ]
    },
    {
      "page": "ribbon_projection",
      "title": "Declare Aligned White/Pial Ribbon Sampling",
      "topics": [
        "ribbon_projection"
      ]
    },
    {
      "page": "roi_attributes",
      "title": "List Available ROI Attributes",
      "topics": [
        "roi_attributes",
        "roi_attributes.atlas"
      ]
    },
    {
      "page": "roi_colors_embedding",
      "title": "Embedding-based palette with smooth gradients",
      "topics": [
        "roi_colors_embedding"
      ]
    },
    {
      "page": "roi_colors_maximin_view",
      "title": "Slice-aware maximin palette for ROIs",
      "topics": [
        "roi_colors_maximin_view"
      ]
    },
    {
      "page": "roi_colors_network_harmony",
      "title": "Network-harmonic palette with neighbour separation",
      "topics": [
        "roi_colors_network_harmony"
      ]
    },
    {
      "page": "roi_colors_rule_hcl",
      "title": "Deterministic HCL palette with harmonic variation",
      "topics": [
        "roi_colors_rule_hcl"
      ]
    },
    {
      "page": "roi_metadata",
      "title": "ROI Metadata Functions",
      "topics": [
        "roi_metadata",
        "roi_metadata.atlas"
      ]
    },
    {
      "page": "schaefer_surf",
      "title": "Schaefer Surface Atlas",
      "topics": [
        "schaefer_surf"
      ]
    },
    {
      "page": "schaefer_surf_options",
      "title": "List supported Schaefer surface atlas variants",
      "topics": [
        "schaefer_surf_options"
      ]
    },
    {
      "page": "show_templateflow_cache_path",
      "title": "Show neuroatlas TemplateFlow Cache Path",
      "topics": [
        "show_templateflow_cache_path"
      ]
    },
    {
      "page": "space_transform_manifest",
      "title": "Space Transform Manifest",
      "topics": [
        "space_transform_manifest"
      ]
    },
    {
      "page": "spin_test",
      "title": "Spin Test for Spatial Correlation Significance",
      "topics": [
        "spin_test"
      ]
    },
    {
      "page": "sub_atlas",
      "title": "Select a Subset of Atlas Regions",
      "topics": [
        "sub_atlas",
        "sub_atlas.atlas",
        "sub_atlas.surfatlas"
      ]
    },
    {
      "page": "subcortical_atlas_options",
      "title": "Subcortical Atlas Options (TemplateFlow-backed)",
      "topics": [
        "subcortical_atlas_options"
      ]
    },
    {
      "page": "surface_anatomy",
      "title": "Resolve an anatomical underlay for a surface atlas",
      "topics": [
        "surface_anatomy"
      ]
    },
    {
      "page": "surface_data",
      "title": "Bind Vertex Values to an Exact Surface Domain",
      "topics": [
        "surface_data"
      ]
    },
    {
      "page": "surface_domain",
      "title": "Identify an Exact Surface Vertex Domain",
      "topics": [
        "surface_domain"
      ]
    },
    {
      "page": "surface_geometry",
      "title": "Bind Registration Geometry to a Surface Domain",
      "topics": [
        "surface_geometry"
      ]
    },
    {
      "page": "template_to_coord_space",
      "title": "Get Coordinate Space for Any Template",
      "topics": [
        "template_to_coord_space"
      ]
    },
    {
      "page": "tflow_files",
      "title": "Find TemplateFlow Files Matching Metadata Criteria",
      "topics": [
        "tflow_files"
      ]
    },
    {
      "page": "tflow_spaces",
      "title": "List Available TemplateFlow Template Spaces",
      "topics": [
        "tflow_spaces"
      ]
    },
    {
      "page": "transform_atlas",
      "title": "Transform a Volumetric Atlas to a Template or Cortical Surface",
      "topics": [
        "transform_atlas"
      ]
    },
    {
      "page": "transform_cache_path",
      "title": "Transform Artifact Cache Path",
      "topics": [
        "transform_cache_path"
      ]
    },
    {
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