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"as.matrix,ClusteredNeuroVec-method", "as.matrix,DenseNeuroVec-method", "as.matrix,FileBackedNeuroVec-method", "as.matrix,MappedNeuroVec-method", "as.matrix,NeuroVec-method", "as.matrix,NeuroVecSeq-method", "as.matrix,ROIVec-method" ] }, { "page": "as.numeric-methods", "title": "Convert SparseNeuroVol to numeric", "topics": [ "as.numeric,ROIVol-method", "as.numeric,SparseNeuroVol-method" ] }, { "page": "as.raster", "title": "Generic Method for Converting Objects to Raster Format", "topics": [ "as.raster" ] }, { "page": "as.raster-methods", "title": "Convert neuroimaging objects to raster images", "topics": [ "as.raster,NeuroSlice-method", "as.raster,NeuroVol-method" ] }, { "page": "as.sparse", "title": "Convert to from dense to sparse representation", "topics": [ "as.sparse" ] }, { "page": "as.sparse-methods", "title": "Convert DenseNeuroVec to sparse representation using mask", "topics": [ "as.sparse,DenseNeuroVec,LogicalNeuroVol-method", "as.sparse,DenseNeuroVec,numeric-method", "as.sparse,DenseNeuroVol,LogicalNeuroVol-method", "as.sparse,DenseNeuroVol,numeric-method", "as.sparse,ROIVol,ANY-method" ] }, { "page": "as.vector-methods", "title": "Convert SparseNeuroVol to a base vector", "topics": [ "as.vector,SparseNeuroVol-method" ] }, { "page": "automask-methods", "title": "Compute a brain-like mask from image intensities", "topics": [ "automask", "automask,AbstractSparseNeuroVec-method", "automask,DenseNeuroVec-method", "automask,FileBackedNeuroVec-method", "automask,MappedNeuroVec-method", "automask,NeuroVol-method" ] }, { "page": "axcodes-methods", "title": "Get Orientation Axis Codes", "topics": [ "axcodes", "axcodes,matrix-method", "axcodes,NeuroObj-method", "axcodes,NeuroSpace-method" ] }, { "page": "axes-methods", "title": "Extract Image Axes", "topics": [ "axes", "axes,NeuroSpace-method" ] }, { "page": "AxisSet-class", "title": "AxisSet", "topics": [ "AxisSet-class" ] }, { "page": "AxisSet1D-class", "title": "AxisSet1D", "topics": [ "AxisSet1D-class" ] }, { "page": "AxisSet2D-class", "title": "AxisSet2D", "topics": [ "AxisSet2D-class" ] }, { "page": "AxisSet3D-class", "title": "AxisSet3D Class", "topics": [ "AxisSet3D-class" ] }, { "page": "AxisSet4D-class", "title": "AxisSet4D Class", "topics": [ "AxisSet4D-class" ] }, { "page": "AxisSet5D-class", "title": "AxisSet5D Class", "topics": [ "AxisSet5D-class" ] }, { "page": "BigNeuroVec-methods", "title": "Create a Memory-Mapped Neuroimaging Vector", "topics": [ "BigNeuroVec" ] }, { "page": "BigNeuroVec-class", "title": "BigNeuroVec Class", "topics": [ "BigNeuroVec-class" ] }, { "page": "bilateral_filter", "title": "Apply a bilateral filter to a volumetric image", "topics": [ "bilateral_filter" ] }, { "page": "bilateral_filter_4d", "title": "Apply a 4D bilateral filter to a NeuroVec", "topics": [ "bilateral_filter_4d" ] }, { "page": "BinaryReader", "title": "Create Binary Reader Object", "topics": [ "BinaryReader" ] }, { "page": "BinaryReader-class", "title": "BinaryReader Class", "topics": [ "BinaryReader-class" ] }, { "page": "BinaryWriter", "title": "Create Binary Writer Object", "topics": [ "BinaryWriter" ] }, { "page": "BinaryWriter-class", "title": "BinaryWriter Class", "topics": [ "BinaryWriter-class" ] }, { "page": "bounds-methods", "title": "Extract Spatial Bounds of an Image", "topics": [ "bounds", "bounds,NeuroSpace-method" ] }, { "page": "centroid-methods", "title": "return the centroid of an object", "topics": [ "centroid", "centroid,NeuroSpace-method", "centroid,ROICoords-method" ] }, { "page": "centroids-methods", "title": "Return a matrix of centroids of an object", "topics": [ "centroids", "centroids,ClusteredNeuroVec-method", "centroids,ClusteredNeuroVol-method" ] }, { "page": "cgb_filter", "title": "Correlation-guided bilateral filtering (convenience wrapper)", "topics": [ "cgb_filter" ] }, { "page": "cgb_make_graph", "title": "Build a correlation-guided bilateral (CGB) graph", "topics": [ "cgb_make_graph" ] }, { "page": "cgb_smooth", "title": "Apply a precomputed CGB graph to volumetric data", "topics": [ "cgb_smooth" ] }, { "page": "cgb_smooth_loro", "title": "Leave-one-run-out smoothing helper", "topics": [ "cgb_smooth_loro" ] }, { "page": "clip_level-methods", "title": "Estimate an image clip level", "topics": [ "clip_level", "clip_level,AbstractSparseNeuroVec-method", "clip_level,DenseNeuroVec-method", "clip_level,FileBackedNeuroVec-method", "clip_level,MappedNeuroVec-method", "clip_level,NeuroVol-method" ] }, { "page": "close-methods", "title": "Close a BinaryReader or BinaryWriter", "topics": [ "close,BinaryReader-method", "close,BinaryWriter-method" ] }, { "page": "cluster_searchlight_series", "title": "Cluster-centroid searchlight over cluster time-series", "topics": [ "cluster_searchlight_series" ] }, { "page": "clustered_searchlight", "title": "Create a clustered searchlight iterator", "topics": [ "clustered_searchlight" ] }, { "page": "ClusteredNeuroVec", "title": "ClusteredNeuroVec: Cluster-aware 4D neuroimaging data", "topics": [ "ClusteredNeuroVec" ] }, { "page": "ClusteredNeuroVec-class", "title": "ClusteredNeuroVec Class", "topics": [ "ClusteredNeuroVec-class" ] }, { "page": "ClusteredNeuroVol-class", "title": "ClusteredNeuroVol Class", "topics": [ "ClusteredNeuroVol", "ClusteredNeuroVol-class" ] }, { "page": "ColumnReader", "title": "Create Column Reader Object", "topics": [ "ColumnReader" ] }, { "page": "ColumnReader-class", "title": "ColumnReader", "topics": [ "ColumnReader-class" ] }, { "page": "Compare-methods", "title": "Comparison Operations", "topics": [ "Compare,DenseNeuroVol,DenseNeuroVol-method", "Compare,DenseNeuroVol,numeric-method", "Compare,NeuroVec,NeuroVec-method", "Compare,numeric,DenseNeuroVol-method", "Compare,numeric,SparseNeuroVol-method", "Compare,SparseNeuroVol,numeric-method", "Compare-methods" ] }, { "page": "concat-methods", "title": "Concatenate two objects in the time dimension", "topics": [ "concat", "concat,AbstractSparseNeuroVec,missing-method", "concat,DenseNeuroVol,DenseNeuroVol-method", "concat,DenseNeuroVol,missing-method", "concat,NeuroVec,NeuroVec-method", "concat,NeuroVec,NeuroVol-method", "concat,NeuroVol,NeuroVec-method", "concat,ROIVec,ROIVec-method", "concat,SparseNeuroVec,SparseNeuroVec-method" ] }, { "page": "conn_comp-methods", "title": "Connected components", "topics": [ "conn_comp", "conn_comp,NeuroVol-method" ] }, { "page": "conn_comp_3D", "title": "Extract Connected Components from a 3D Binary Mask", "topics": [ "conn_comp_3D" ] }, { "page": "coord_to_grid-methods", "title": "convert n-dimensional real world coordinates to grid coordinates", "topics": [ "coord_to_grid", "coord_to_grid,NeuroSpace,matrix-method", "coord_to_grid,NeuroSpace,numeric-method", "coord_to_grid,NeuroVol,matrix-method", "coord_to_grid,NeuroVol,numeric-method" ] }, { "page": "coord_to_index-methods", "title": "convert n-dimensional real world coordinates to 1D indices", "topics": [ "coord_to_index", "coord_to_index,NeuroSpace,matrix-method", "coord_to_index,NeuroSpace,numeric-method", "coord_to_index,NeuroVol,matrix-method" ] }, { "page": "coords", "title": "Extract coordinates from an object", "topics": [ "coords" ] }, { "page": "coords-methods", "title": "Extract Coordinates from an IndexLookupVol Object", "topics": [ "coords,AbstractSparseNeuroVec-method", "coords,IndexLookupVol-method", "coords,ROICoords-method", "coords,ROIVol-method" ] }, { "page": "createNIfTIHeader", "title": "Create an Empty NIfTI-1 Header List", "topics": [ "createNIfTIHeader" ] }, { "page": "cuboid_roi", "title": "Create A Cuboid Region of Interest", "topics": [ "cuboid_roi" ] }, { "page": "data_file-methods", "title": "Generic function to get the name of the data file, given a file name and a 'FileFormat' instance.", "topics": [ "data_file", "data_file,FileFormat,character-method" ] }, { "page": "data_file_matches-methods", "title": "Generic function to test whether a file name conforms to the given a 'FileFormat' instance. Will test for match to data file only", "topics": [ "data_file_matches", "data_file_matches,FileFormat,character-method" ] }, { "page": "data_reader", "title": "Create a Data Reader", "topics": [ "data_reader" ] }, { "page": "data_reader-methods", "title": "Create Data Reader for AFNI Format", "topics": [ "data_reader,AFNIMetaInfo-method", "data_reader,NIFTIMetaInfo-method" ] }, { "page": "DenseNeuroVec-class", "title": "DenseNeuroVec Class", "topics": [ "DenseNeuroVec", "DenseNeuroVec-class" ] }, { "page": "DenseNeuroVol-class", "title": "DenseNeuroVol Class", "topics": [ "DenseNeuroVol", "DenseNeuroVol-class" ] }, { "page": "deoblique", "title": "Deoblique a Neuroimaging Space or Volume", "topics": [ "deoblique" ] }, { "page": "dim_of-methods", "title": "Get the length of a given dimension of an object", "topics": [ "dim_of", "dim_of,NeuroSpace,NamedAxis-method" ] }, { "page": "dim-methods", "title": "Get Dimensions of FileMetaInfo Object", "topics": [ "dim,ClusteredNeuroVec-method", "dim,FileMetaInfo-method", "dim,NeuroHyperVec-method", "dim,NeuroObj-method", "dim,NeuroSpace-method", "dim,ROICoords-method", "dim,ROIVol-method" ] }, { "page": "downsample-methods", "title": "Downsample an Image", "topics": [ "downsample", "downsample,DenseNeuroVec-method", "downsample,DenseNeuroVol-method", "downsample,NeuroVec-method", "downsample,NeuroVol-method", "downsample,SparseNeuroVec-method" ] }, { "page": "drop", "title": "Generic Drop Method", "topics": [ "drop" ] }, { "page": "drop_dim-methods", "title": "Drop a Dimension from an Object", "topics": [ "drop_dim", "drop_dim,AxisSet2D,missing-method", "drop_dim,AxisSet2D,numeric-method", "drop_dim,AxisSet3D,missing-method", "drop_dim,AxisSet3D,numeric-method", "drop_dim,NeuroSpace,missing-method", "drop_dim,NeuroSpace,numeric-method" ] }, { "page": "drop-methods", "title": "Drop a dimension", "topics": [ "drop,NeuroVec-method" ] }, { "page": "ecode_name", "title": "Get Extension Code Name", "topics": [ "ecode_name" ] }, { "page": "embed_kernel-methods", "title": "Generic function to position kernel in a position in image space", "topics": [ "embed_kernel", "embed_kernel,Kernel,NeuroSpace,numeric-method" ] }, { "page": "enhance_stat_map", "title": "Enhance an unsmoothed statistical map for visualization", "topics": [ "enhance_stat_map" ] }, { "page": "extension", "title": "Get Extension by Code", "topics": [ "extension", "extension,NiftiExtensionList,numeric-method" ] }, { "page": "extensions", "title": "Get Extensions from an Object", "topics": [ "extensions" ] }, { "page": "extractor3d", "title": "Array-like access for 3-dimensional data structures", "topics": [ "extractor3d", "[,ArrayLike3D,matrix,missing,ANY-method", "[,ArrayLike3D,missing,missing,ANY-method", "[,ArrayLike3D,missing,numeric,ANY-method", "[,ArrayLike3D,numeric,missing,ANY-method" ] }, { "page": "extractor4d", "title": "Array-like access for 4-dimensional data structures", "topics": [ "extractor4d", "[,ArrayLike4D,integer,missing,ANY-method", "[,ArrayLike4D,matrix,missing,ANY-method", "[,ArrayLike4D,missing,missing,ANY-method", "[,ArrayLike4D,missing,numeric,ANY-method", "[,ArrayLike4D,numeric,missing,ANY-method", "[,ArrayLike4D,numeric,numeric,ANY-method", "[,ClusteredNeuroVec,missing,missing,ANY-method", "[,ClusteredNeuroVec,numeric,numeric,ANY-method" ] }, { "page": "file_matches-methods", "title": "Generic function to test whether a file name conforms to the given 'FileFormat' instance. Will test for match to either header file or data file", "topics": [ "file_matches", "file_matches,FileFormat,character-method" ] }, { "page": "FileBackedNeuroVec", "title": "Create a File-Backed Neuroimaging Vector", "topics": [ "FileBackedNeuroVec" ] }, { "page": "FileBackedNeuroVec-class", "title": "FileBackedNeuroVec Class", "topics": [ "FileBackedNeuroVec-class" ] }, { "page": "FileFormat-class", "title": "FileFormat Class", "topics": [ "FileFormat-class" ] }, { "page": "FileFormat-operations", "title": "File Format Operations for Neuroimaging Data", "topics": [ "FileFormat-operations" ] }, { "page": "FileMetaInfo-class", "title": "FileMetaInfo Class", "topics": [ "AFNIMetaInfo-class", "FileMetaInfo-class", "NIFTIMetaInfo-class" ] }, { "page": "FileSource-class", "title": "FileSource Class", "topics": [ "FileSource-class" ] }, { "page": "findAnatomy3D", "title": "Find 3D anatomical orientation from axis abbreviations", "topics": [ "findAnatomy3D" ] }, { "page": "gaussian_blur", "title": "Gaussian Blur for Volumetric Images", "topics": [ "gaussian_blur" ] }, { "page": "get_afni_attribute", "title": "Get AFNI Attribute from Extension", "topics": [ "get_afni_attribute" ] }, { "page": "grid_to_coord-methods", "title": "Generic function to convert N-dimensional grid coordinates to real world coordinates", "topics": [ "grid_to_coord", "grid_to_coord,NeuroSpace,matrix-method", "grid_to_coord,NeuroSpace,numeric-method", "grid_to_coord,NeuroVol,matrix-method" ] }, { "page": "grid_to_grid-methods", "title": "Generic function to convert voxel coordinates in the reference space (LPI) to native array space.", "topics": [ "grid_to_grid", "grid_to_grid,matrix,matrix-method", "grid_to_grid,NeuroSpace,matrix-method" ] }, { "page": "grid_to_index-methods", "title": "Generic function to convert N-dimensional grid coordinates to 1D indices", "topics": [ "grid_to_index", "grid_to_index,NeuroSlice,matrix-method", "grid_to_index,NeuroSlice,numeric-method", "grid_to_index,NeuroSpace,matrix-method", "grid_to_index,NeuroSpace,numeric-method", "grid_to_index,NeuroVol,matrix-method", "grid_to_index,NeuroVol,numeric-method" ] }, { "page": "guided_filter", "title": "Edge-Preserving Guided Filter for Volumetric Images", "topics": [ "guided_filter" ] }, { "page": "has_extensions", "title": "Check if Extensions are Present", "topics": [ "has_extensions", "has_extensions,list-method", "has_extensions,NiftiExtensionList-method" ] }, { "page": "header-methods", "title": "Access NIfTI Header Information", "topics": [ "header", "header,character-method", "header,FileMetaInfo-method", "header,NeuroObj-method" ] }, { "page": "header_file-methods", "title": "Generic function to get the name of the header file, given a file name and a 'FileFormat' instance.", "topics": [ "header_file", "header_file,FileFormat,character-method" ] }, { "page": "header_file_matches-methods", "title": "Generic function to test whether a file name conforms to the given 'FileFormat' instance. Will test for match to header file only", "topics": [ "header_file_matches", "header_file_matches,FileFormat,character-method" ] }, { "page": "image", "title": "Generic Image Method for Creating Visual Representations", "topics": [ "image" ] }, { "page": "index_to_coord-methods", "title": "convert 1d indices to n-dimensional real world coordinates", "topics": [ "index_to_coord", "index_to_coord,NeuroSpace,integer-method", "index_to_coord,NeuroSpace,numeric-method", "index_to_coord,NeuroVec,integer-method", "index_to_coord,NeuroVol,integer-method" ] }, { "page": "index_to_grid-methods", "title": "Convert 1d indices to n-dimensional grid coordinates", "topics": [ "index_to_grid", "index_to_grid,NeuroSlice,numeric-method", "index_to_grid,NeuroSpace,numeric-method", "index_to_grid,NeuroVec,index-method", "index_to_grid,NeuroVec,integer-method", "index_to_grid,NeuroVol,index-method", "index_to_grid,NeuroVol,integer-method" ] }, { "page": "IndexLookupVol-class", "title": "IndexLookupVol Class", "topics": [ "IndexLookupVol", "IndexLookupVol-class" ] }, { "page": "indices", "title": "Extract indices", "topics": [ "indices" ] }, { "page": "indices-methods", "title": "Get Indices from an IndexLookupVol Object", "topics": [ "indices,AbstractSparseNeuroVec-method", "indices,IndexLookupVol-method", "indices,ROIVec-method", "indices,ROIVol-method" ] }, { "page": "inverse_trans-methods", "title": "Extract inverse image coordinate transformation", "topics": [ "inverse_trans", "inverse_trans,NeuroSpace-method" ] }, { "page": "Kernel", "title": "Create a Kernel object from a function of distance from kernel center", "topics": [ "Kernel" ] }, { "page": "Kernel-class", "title": "Kernel", "topics": [ "Kernel-class" ] }, { "page": "labels-methods", "title": "Get Labels from ClusteredNeuroVec", "topics": [ "labels,ClusteredNeuroVec-method" ] }, { "page": "laplace_enhance", "title": "Laplacian Enhancement Filter for Volumetric Images", "topics": [ "laplace_enhance" ] }, { "page": "length-methods", "title": "Get length of NeuroVec object", "topics": [ "length,ClusteredNeuroVec-method", "length,NeuroVec-method", "length,NeuroVecSeq-method", "length,ROICoords-method", "length,ROIVol-method" ] }, { "page": "linear_access", "title": "Extract values from an array-like object using linear indexing.", "topics": [ "linear_access" ] }, { "page": "linear_access-methods", "title": "Linear Access Method for FileBackedNeuroVec", "topics": [ "linear_access,AbstractSparseNeuroVec,numeric-method", "linear_access,DenseNeuroVec,integer-method", "linear_access,DenseNeuroVec,numeric-method", "linear_access,DenseNeuroVol,integer-method", "linear_access,DenseNeuroVol,numeric-method", "linear_access,FileBackedNeuroVec,numeric-method", "linear_access,MappedNeuroVec,numeric-method", "linear_access,NeuroHyperVec,ANY-method", "linear_access,NeuroVecSeq,numeric-method", "linear_access,SparseNeuroVol,numeric-method" ] }, { "page": "list_afni_attributes", "title": "List AFNI Attributes in Extension", "topics": [ "list_afni_attributes" ] }, { "page": "load_data-methods", "title": "Load image data from a NeuroVecSource object", "topics": [ "load_data,MappedNeuroVecSource-method", "load_data,NeuroVecSource-method", "load_data,NeuroVolSource-method", "load_data,SparseNeuroVecSource-method" ] }, { "page": "Logic-methods", "title": "Logic Operations for Neuroimaging Volumes", "topics": [ "Logic,DenseNeuroVol,DenseNeuroVol-method", "Logic,logical,NeuroVol-method", "Logic,NeuroVol,logical-method", "Logic,NeuroVol,SparseNeuroVol-method", "Logic,SparseNeuroVol,NeuroVol-method", "Logic,SparseNeuroVol,SparseNeuroVol-method", "Logic-methods" ] }, { "page": "LogicalNeuroVol-class", "title": "LogicalNeuroVol Class", "topics": [ "LogicalNeuroVol", "LogicalNeuroVol-class" ] }, { "page": "lookup", "title": "Index Lookup operation", "topics": [ "lookup" ] }, { "page": "lookup-methods", "title": "Lookup Values in an IndexLookupVol Object", "topics": [ "lookup,AbstractSparseNeuroVec,numeric-method", "lookup,IndexLookupVol,numeric-method" ] }, { "page": "make_time_weights", "title": "Build smooth time weights from motion/outlier metrics", "topics": [ "make_time_weights" ] }, { "page": "map_values-methods", "title": "Map Values from One Set to Another Using a User-supplied Lookup Table", "topics": [ "map_values", "map_values,NeuroVol,list-method", "map_values,NeuroVol,matrix-method" ] }, { "page": "map-methods", "title": "Apply a function to an object.", "topics": [ "mapf", "mapf,NeuroVol,Kernel-method" ] }, { "page": "MappedNeuroVec-class", "title": "MappedNeuroVec Class", "topics": [ "MappedNeuroVec", "MappedNeuroVec-class" ] }, { "page": "MappedNeuroVecSource-class", "title": "MappedNeuroVecSource Class", "topics": [ "MappedNeuroVecSource", "MappedNeuroVecSource-class" ] }, { "page": "mapToColors", "title": "Map intensity values to colors", "topics": [ "mapToColors" ] }, { "page": "mask-methods", "title": "Extract Mask from Neuroimaging Object", "topics": [ "mask", "mask,AbstractSparseNeuroVec-method", "mask,ClusteredNeuroVol-method", "mask,DenseNeuroVec-method", "mask,DenseNeuroVol-method", "mask,FileBackedNeuroVec-method", "mask,LogicalNeuroVol-method", "mask,MappedNeuroVec-method", "mask,NeuroHyperVec-method", "mask,NeuroSlice-method", "mask,SparseNeuroVecSource-method" ] }, { "page": "matricized_access-methods", "title": "Extract values from a 4D tensor using a matrix of time-space indices.", "topics": [ "matricized_access", "matricized_access,BigNeuroVec,integer-method", "matricized_access,BigNeuroVec,matrix-method", "matricized_access,BigNeuroVec,numeric-method", "matricized_access,SparseNeuroVec,integer-method", "matricized_access,SparseNeuroVec,matrix-method", "matricized_access,SparseNeuroVec,numeric-method" ] }, { "page": "matrixToQuatern", "title": "Convert a Transformation Matrix to a Quaternion Representation", "topics": [ "matrixToQuatern" ] }, { "page": "mean-methods", "title": "Temporal Mean of a NeuroVec", "topics": [ "mean,DenseNeuroVec-method", "mean,NeuroVec-method", "mean,SparseNeuroVec-method", "mean-methods" ] }, { "page": "meta_info", "title": "Lightweight metadata for neuroimaging files", "topics": [ "meta_info", "meta_info,character-method", "meta_info,FileMetaInfo-method" ] }, { "page": "MetaInfo", "title": "Create Neuroimaging Metadata Object", "topics": [ "MetaInfo" ] }, { "page": "MetaInfo-class", "title": "MetaInfo Class", "topics": [ "MetaInfo-class" ] }, { "page": "NamedAxis-class", "title": "NamedAxis", "topics": [ "NamedAxis-class" ] }, { "page": "ndim-methods", "title": "Extract the number of dimensions of an object", "topics": [ "ndim", "ndim,AxisSet-method", "ndim,ClusteredNeuroVec-method", "ndim,NeuroHyperVec-method", "ndim,NeuroObj-method", "ndim,NeuroSpace-method" ] }, { "page": "neuro-downsample", "title": "Downsampling Methods for Neuroimaging Objects", "topics": [ "neuro-downsample" ] }, { "page": "neuro-ops", "title": "Arithmetic and Comparison Operations for Neuroimaging Objects", "topics": [ "neuro-ops" ] }, { "page": "neuro-resample", "title": "Resampling Methods for Neuroimaging Objects", "topics": [ "neuro-resample" ] }, { "page": "NeuroBucket-class", "title": "NeuroBucket", "topics": [ "NeuroBucket-class" ] }, { "page": "NeuroHyperVec", "title": "Constructor for NeuroHyperVec class", "topics": [ "NeuroHyperVec" ] }, { "page": "NeuroHyperVec-class", "title": "NeuroHyperVec Class", "topics": [ "NeuroHyperVec-class", "[,NeuroHyperVec,ANY,ANY,ANY-method", "[.NeuroHyperVec" ] }, { "page": "NeuroObj-class", "title": "NeuroObj Class", "topics": [ "NeuroObj-class" ] }, { "page": "NeuroSlice", "title": "NeuroSlice: 2D Neuroimaging Data Container", "topics": [ "NeuroSlice" ] }, { "page": "NeuroSlice-class", "title": "NeuroSlice Class", "topics": [ "NeuroSlice-class" ] }, { "page": "NeuroSpace", "title": "NeuroSpace: Spatial Reference System for Neuroimaging Data", "topics": [ "NeuroSpace" ] }, { "page": "NeuroSpace-class", "title": "NeuroSpace Class", "topics": [ "NeuroSpace-class" ] }, { "page": "NeuroVec-class", "title": "NeuroVec Class", "topics": [ "NeuroVec", "NeuroVec-class" ] }, { "page": "NeuroVecSeq", "title": "NeuroVecSeq: A Container for Sequential NeuroVec Objects", "topics": [ "NeuroVecSeq" ] }, { "page": "NeuroVecSeq-class", "title": "NeuroVecSeq Class", "topics": [ "NeuroVecSeq-class" ] }, { "page": "NeuroVecSource", "title": "NeuroVecSource", "topics": [ "NeuroVecSource" ] }, { "page": "NeuroVecSource-class", "title": "NeuroVecSource Class", "topics": [ "NeuroVecSource-class" ] }, { "page": "NeuroVol", "title": "NeuroVol: 3D Neuroimaging Volume Class", "topics": [ "NeuroVol" ] }, { "page": "NeuroVol-class", "title": "NeuroVol Class", "topics": [ "NeuroVol-class" ] }, { "page": "NeuroVolSource-class", "title": "Constructor for NeuroVolSource", "topics": [ "NeuroVolSource" ] }, { "page": "NiftiExtension", "title": "Create a NIfTI Extension", "topics": [ "NiftiExtension" ] }, { "page": "NiftiExtension-class", "title": "NiftiExtension Class", "topics": [ "NiftiExtension-class", "show,NiftiExtension-method" ] }, { "page": "NiftiExtensionCodes", "title": "Known NIfTI Extension Codes", "topics": [ "NiftiExtensionCodes" ] }, { "page": "NiftiExtensionList-class", "title": "NiftiExtensionList Class", "topics": [ "NiftiExtensionList-class", "show,NiftiExtensionList-method" ] }, { "page": "NIFTIMetaInfo", "title": "Create NIFTI Format Metadata Object", "topics": [ "NIFTIMetaInfo" ] }, { "page": "None", "title": "Pre-defined null axis", "topics": [ "None" ] }, { "page": "not-methods", "title": "Logical Negation for Neuroimaging Volumes", "topics": [ "!,DenseNeuroVol-method", "!,SparseNeuroVol-method", "not-methods" ] }, { "page": "NullAxis", "title": "Pre-defined null axis set", "topics": [ "NullAxis" ] }, { "page": "num_clusters-methods", "title": "Number of Clusters", "topics": [ "num_clusters", "num_clusters,ClusteredNeuroVec-method", "num_clusters,ClusteredNeuroVol-method" ] }, { "page": "numericOrMatrix-class", "title": "numericOrMatrix Union", "topics": [ "numericOrMatrix-class" ] }, { "page": "orientation_utils", "title": "Orientation utility functions", "topics": [ "affine_to_axcodes", "affine_to_orientation", "apply_orientation", "axcodes_to_orientation", "orientation_inverse_affine", "orientation_to_axcodes", "orientation_transform", "orientation_utils" ] }, { "page": "OrientationList2D", "title": "Pre-defined 2D orientation configurations", "topics": [ "OrientationList2D" ] }, { "page": "OrientationList3D", "title": "Pre-defined 3D orientation configurations", "topics": [ "OrientationList3D" ] }, { "page": "origin-methods", "title": "Extract Image Origin", "topics": [ "origin", "origin,NeuroHyperVec-method", "origin,NeuroSpace-method", "origin,NeuroVec-method", "origin,NeuroVol-method" ] }, { "page": "parse_afni_extension", "title": "Parse AFNI Extension", "topics": [ "parse_afni_extension" ] }, { "page": "parse_extension", "title": "Parse NIfTI Extension Data", "topics": [ "parse_extension" ] }, { "page": "partition-methods", "title": "Partition an image into a set of disjoint clusters", "topics": [ "partition", "partition,DenseNeuroVol,numeric-method", "partition,LogicalNeuroVol,integer-method", "partition,LogicalNeuroVol,numeric-method" ] }, { "page": "patch_set", "title": "Generate a set of coordinate \"patches\" of fixed size from an image object.", "topics": [ "patch_set" ] }, { "page": "patch_set-methods", "title": "Create a patch set from a NeuroVol object", "topics": [ "patch_set,NeuroVol,numeric,LogicalNeuroVol-method", "patch_set,NeuroVol,numeric,missing-method" ] }, { "page": "perm_mat-methods", "title": "Extract permutation matrix associated with an image", "topics": [ "perm_mat", "perm_mat,AxisSet2D-method", "perm_mat,AxisSet3D-method", "perm_mat,NeuroSpace-method" ] }, { "page": "plot_checkerboard", "title": "Checkerboard comparison of two registered volumes", "concept": [ "plot_neuro" ], "topics": [ "plot_checkerboard" ] }, { "page": "plot_edge_overlay", "title": "Overlay fixed and moving edge maps on a background volume", "concept": [ "plot_neuro" ], "topics": [ "plot_edge_overlay" ] }, { "page": "plot_montage", "title": "Montage of slices through a volume", "concept": [ "plot_neuro" ], "topics": [ "plot_montage" ] }, { "page": "plot_ortho", "title": "Orthogonal three-plane view with optional crosshairs and overlay", "concept": [ "plot_neuro" ], "topics": [ "plot_ortho" ] }, { "page": "plot_overlay", "title": "Composite a statistical map on a structural background", "concept": [ "plot_neuro" ], "topics": [ "plot_overlay" ] }, { "page": "plot-methods", "title": "Plot a NeuroSlice", "topics": [ "plot,NeuroSlice,ANY-method", "plot,NeuroSlice-method", "plot,NeuroVol,missing-method", "plot,NeuroVol,NeuroVol-method", "plot,NeuroVol-method" ] }, { "page": "prepare_confounds", "title": "Prepare weighted nuisance projectors for each run", "topics": [ "prepare_confounds" ] }, { "page": "quaternToMatrix", "title": "Convert Quaternion Parameters to a Transformation Matrix", "topics": [ "quaternToMatrix" ] }, { "page": "random_searchlight", "title": "Create a spherical random searchlight iterator", "topics": [ "random_searchlight" ] }, { "page": "read_header", "title": "read header information of an image file", "topics": [ "read_header" ] }, { "page": "read_hyper_vec", "title": "Read a 5D image as a NeuroHyperVec", "topics": [ "read_hyper_vec" ] }, { "page": "read_image", "title": "read_image", "topics": [ "read_image" ] }, { "page": "read_meta_info-methods", "title": "Generic function to read image meta info given a file", "topics": [ "read_meta_info", "read_meta_info,AFNIFormat-method", "read_meta_info,NIFTIFormat-method" ] }, { "page": "read_vec", "title": "read_vec", "topics": [ "read_vec" ] }, { "page": "read_vol", "title": "Load a single 3D image volume from a file", "topics": [ "read_vol" ] }, { "page": "read_vol_list", "title": "read_vol_list", "topics": [ "read_vol_list" ] }, { "page": "reorient-methods", "title": "Remap the grid-to-world coordinates mapping of an image.", "topics": [ "reorient", "reorient,NeuroSpace,character-method" ] }, { "page": "resample-methods", "title": "Resample an Image to Match the Space of Another Image", "topics": [ "resample", "resample,ClusteredNeuroVol,NeuroSpace-method", "resample,ClusteredNeuroVol,NeuroVol-method", "resample,NeuroVol,NeuroSpace-method", "resample,NeuroVol,NeuroVol-method" ] }, { "page": "resample_to", "title": "Resample an image with readable method names", "topics": [ "resample_to" ] }, { "page": "resampled_searchlight", "title": "Create a resampled searchlight iterator", "topics": [ "bootstrap_searchlight", "resampled_searchlight" ] }, { "page": "resolve_cmap", "title": "Neuroimaging color palettes and helpers", "topics": [ "resolve_cmap" ] }, { "page": "ROI-class", "title": "ROI", "topics": [ "ROI-class" ] }, { "page": "ROICoords", "title": "Create ROI Coordinates Object", "topics": [ "ROICoords" ] }, { "page": "ROICoords-class", "title": "ROICoords", "topics": [ "ROICoords-class" ] }, { "page": "ROIVec", "title": "Create an instance of class 'ROIVec'", "topics": [ "ROIVec" ] }, { "page": "ROIVec-class", "title": "ROIVec", "topics": [ "ROIVec-class" ] }, { "page": "ROIVecWindow-class", "title": "ROIVecWindow", "topics": [ "ROIVecWindow-class" ] }, { "page": "ROIVol", "title": "Create ROI Volume Object", "topics": [ "ROIVol" ] }, { "page": "ROIVol-class", "title": "ROIVol", "topics": [ "ROIVol-class" ] }, { "page": "ROIVolWindow-class", "title": "ROIVolWindow", "topics": [ "ROIVolWindow-class" ] }, { "page": "scale_fill_neuro", "title": "A ggplot2 fill scale with neuroimaging-friendly defaults", "topics": [ "scale_fill_neuro" ] }, { "page": "scale_series-methods", "title": "Generic functions to scale (center and/or normalize by standard deviation) each series of a 4D image That is, if the 4th dimension is 'time' each series is a 1D time series.", "topics": [ "scale_series", "scale_series,DenseNeuroVec,logical,logical-method", "scale_series,NeuroVec,logical,logical-method", "scale_series,NeuroVec,logical,missing-method", "scale_series,NeuroVec,missing,logical-method", "scale_series,NeuroVec,missing,missing-method", "scale_series,SparseNeuroVec,logical,logical-method" ] }, { "page": "searchlight", "title": "Create an exhaustive searchlight iterator", "topics": [ "searchlight" ] }, { "page": "searchlight_coords", "title": "Create an exhaustive searchlight iterator for voxel coordinates using spherical_roi", "topics": [ "searchlight_coords" ] }, { "page": "searchlight_indices", "title": "Compile spherical searchlights to full-volume linear indices", "topics": [ "searchlight_indices" ] }, { "page": "searchlight_shape_functions", "title": "Convenience shape generators for 'resampled_searchlight()'", "topics": [ "blobby_shape", "cube_shape", "ellipsoid_shape", "searchlight_shape_functions" ] }, { "page": "searchlight-methods", "title": "Searchlight Analysis Methods", "topics": [ "searchlight-methods" ] }, { "page": "series-methods", "title": "Extract one or more series from object", "topics": [ "series", "series,AbstractSparseNeuroVec,integer-method", "series,AbstractSparseNeuroVec,matrix-method", "series,AbstractSparseNeuroVec,numeric-method", "series,AbstractSparseNeuroVec,ROICoords-method", "series,ClusteredNeuroVec,numeric-method", "series,DenseNeuroVec,integer-method", "series,DenseNeuroVec,matrix-method", "series,NeuroHyperVec,ANY-method", "series,NeuroVec,integer-method", "series,NeuroVec,LogicalNeuroVol-method", "series,NeuroVec,matrix-method", "series,NeuroVec,NeuroVol-method", "series,NeuroVec,numeric-method", "series,NeuroVec,ROICoords-method", "series,NeuroVecSeq,integer-method", "series,NeuroVecSeq,matrix-method", "series,NeuroVecSeq,numeric-method", "series_roi,NeuroVec,LogicalNeuroVol-method", "series_roi,NeuroVec,matrix-method", "series_roi,NeuroVec,numeric-method", "series_roi,NeuroVec,ROICoords-method", "series_roi,NeuroVecSeq,matrix-method" ] }, { "page": "series_roi", "title": "Extract time series from specific voxel coordinates and return as ROI object", "topics": [ "series_roi" ] }, { "page": "show-methods", "title": "Show method for NamedAxis objects", "topics": [ "show,AxisSet1D-method", "show,AxisSet2D-method", "show,AxisSet3D-method", "show,AxisSet4D-method", "show,ClusteredNeuroVec-method", "show,ClusteredNeuroVol-method", "show,DenseNeuroVec-method", "show,DenseNeuroVol-method", "show,FileMetaInfo-method", "show,IndexLookupVol-method", "show,Kernel-method", "show,MappedNeuroVec-method", "show,NamedAxis-method", "show,NeuroHyperVec-method", "show,NeuroSlice-method", "show,NeuroSpace-method", "show,NeuroVec-method", "show,NeuroVecSeq-method", "show,NeuroVecSource-method", "show,NeuroVol-method", "show,ROICoords-method", "show,ROIVec-method", "show,ROIVol-method", "show,SparseNeuroVec-method", "show,SparseNeuroVol-method" ] }, { "page": "simulate_fmri", "title": "Simulate fMRI Data", "topics": [ "simulate_fmri" ] }, { "page": "slice-methods", "title": "Extract image slice", "topics": [ "slice", "slice,NeuroVol,numeric,NeuroSpace,AxisSet3D-method", "slice,NeuroVol,numeric,numeric,missing-method" ] }, { "page": "slices-methods", "title": "Extract an ordered series of 2D slices from a 3D or 4D object", "topics": [ "slices", "slices,NeuroVol-method" ] }, { "page": "soft_alpha_params", "title": "Self-tuning nonlinear opacity curve for statistical overlays", "topics": [ "soft_alpha_params" ] }, { "page": "space-methods", "title": "Extract Geometric Properties of an Image", "topics": [ "space", "space,ClusteredNeuroVec-method", "space,IndexLookupVol-method", "space,NeuroHyperVec-method", "space,NeuroObj-method", "space,NeuroSpace-method", "space,ROICoords-method" ] }, { "page": "space_utils", "title": "Space utility functions", "topics": [ "output_aligned_space", "slice2volume", "slice_to_volume_affine", "space_utils", "vox2out_vox" ] }, { "page": "spacing-methods", "title": "Extract Voxel Dimensions of an Image", "topics": [ "spacing", "spacing,NeuroHyperVec-method", "spacing,NeuroObj-method", "spacing,NeuroSpace-method", "spacing,ROICoords-method" ] }, { "page": "SparseNeuroVec-class", "title": "SparseNeuroVec Class", "topics": [ "SparseNeuroVec", "SparseNeuroVec-class" ] }, { "page": "SparseNeuroVecSource-class", "title": "SparseNeuroVecSource Class", "topics": [ "SparseNeuroVecSource-class" ] }, { "page": "SparseNeuroVol-class", "title": "SparseNeuroVol Class", "topics": [ "SparseNeuroVol", "SparseNeuroVol-class" ] }, { "page": "spatial-filter", "title": "Spatial Filtering Methods for Neuroimaging Data", "topics": [ "spatial-filter" ] }, { "page": "spherical_roi", "title": "Create a Spherical Region of Interest", "topics": [ "spherical_roi" ] }, { "page": "spherical_roi_set", "title": "Create Multiple Spherical Regions of Interest", "topics": [ "spherical_roi_set" ] }, { "page": "split_blocks-methods", "title": "Cut a vector-valued object into a list of sub-blocks", "topics": [ "split_blocks", "split_blocks,NeuroVec,factor-method", "split_blocks,NeuroVec,integer-method" ] }, { "page": "split_clusters-methods", "title": "Cut an object into a list of spatial or spatiotemporal clusters", "topics": [ "split_clusters", "split_clusters,ClusteredNeuroVol,missing-method", "split_clusters,NeuroVec,ClusteredNeuroVol-method", "split_clusters,NeuroVec,integer-method", "split_clusters,NeuroVec,numeric-method", "split_clusters,NeuroVol,ClusteredNeuroVol-method", "split_clusters,NeuroVol,integer-method", "split_clusters,NeuroVol,numeric-method" ] }, { "page": "split_fill-methods", "title": "Fill Disjoint Sets of Values with the Output of a Function", "topics": [ "split_fill", "split_fill,NeuroVol,factor,function-method" ] }, { "page": "split_reduce-methods", "title": "Summarize Subsets of an Object by Splitting by Row and Applying a Summary Function", "topics": [ "split_reduce", "split_reduce,matrix,factor,function-method", "split_reduce,matrix,factor,missing-method", "split_reduce,matrix,integer,function-method", "split_reduce,NeuroVec,factor,function-method", "split_reduce,NeuroVec,factor,missing-method" ] }, { "page": "split_scale-methods", "title": "Center and/or Scale Row-subsets of a Matrix or Matrix-like Object", "topics": [ "split_scale", "split_scale,DenseNeuroVec,factor,logical,logical-method", "split_scale,DenseNeuroVec,factor,logical,missing-method", "split_scale,DenseNeuroVec,factor,missing,missing-method", "split_scale,matrix,factor,logical,logical-method", "split_scale,matrix,factor,missing,missing-method" ] }, { "page": "square_roi", "title": "Create a square region of interest", "topics": [ "square_roi" ] }, { "page": "strip_extension-methods", "title": "Generic function to strip extension from file name, given a 'FileFormat' instance.", "topics": [ "strip_extension", "strip_extension,FileFormat,character-method" ] }, { "page": "sub_clusters", "title": "Select a Subset of Clusters", "topics": [ "sub_clusters", "sub_clusters,ClusteredNeuroVec,character-method", "sub_clusters,ClusteredNeuroVec,integer-method", "sub_clusters,ClusteredNeuroVec,numeric-method", "sub_clusters,ClusteredNeuroVol,character-method", "sub_clusters,ClusteredNeuroVol,integer-method", "sub_clusters,ClusteredNeuroVol,numeric-method" ] }, { "page": "sub_vector-methods", "title": "Generic function to extract a sub-vector from a 'NeuroVec' object.", "topics": [ "sub_vector", "sub_vector,AbstractSparseNeuroVec,numeric-method", "sub_vector,FileBackedNeuroVec,numeric-method", "sub_vector,NeuroVec,character-method", "sub_vector,NeuroVec,numeric-method", "sub_vector,NeuroVecSeq,numeric-method" ] }, { "page": "Summary-methods", "title": "Summary Methods for Neuroimaging Objects", "topics": [ "Summary,DenseNeuroVol-method", "Summary,SparseNeuroVec-method", "Summary,SparseNeuroVol-method", "Summary-methods" ] }, { "page": "summary-neuro-methods", "title": "Summary of Neuroimaging Objects", "topics": [ "summary,DenseNeuroVec-method", "summary,NeuroVol-method", "summary,SparseNeuroVec-method", "summary-neuro-methods" ] }, { "page": "temporal_access-methods", "title": "Extract full sparse rows across time.", "topics": [ "temporal_access", "temporal_access,BigNeuroVec,integer-method", "temporal_access,BigNeuroVec,numeric-method", "temporal_access,SparseNeuroVec,integer-method", "temporal_access,SparseNeuroVec,numeric-method" ] }, { "page": "theme_neuro", "title": "A minimal, publication-friendly theme for image slices", "topics": [ "theme_neuro" ] }, { "page": "TIME", "title": "Time axis", "topics": [ "TIME" ] }, { "page": "TimeAxis", "title": "Time axis set", "topics": [ "TimeAxis" ] }, { "page": "trans-methods", "title": "Extract image coordinate transformation", "topics": [ "trans", "trans,MetaInfo-method", "trans,NeuroHyperVec-method", "trans,NeuroObj-method", "trans,NeuroSpace-method", "trans,NIFTIMetaInfo-method" ] }, { "page": "values-methods", "title": "Extract Data Values of an Object", "topics": [ "values", "values,ClusteredNeuroVec-method", "values,DenseNeuroVol-method", "values,ROIVec-method", "values,ROIVol-method", "values,SparseNeuroVol-method" ] }, { "page": "vec_from_vols", "title": "Create NeuroVec from list of NeuroVol objects", "topics": [ "vec_from_vols" ] }, { "page": "vectors-methods", "title": "Extract an ordered list of 1D vectors.", "topics": [ "vectors", "vectors,DenseNeuroVec,missing-method", "vectors,matrix,integer-method", "vectors,matrix,missing-method", "vectors,matrix,numeric-method", "vectors,NeuroVec,logical-method", "vectors,NeuroVec,missing-method", "vectors,NeuroVec,numeric-method", "vectors,NeuroVecSeq,logical-method", "vectors,NeuroVecSeq,missing-method", "vectors,NeuroVecSeq,numeric-method", "vectors,ROIVec,integer-method", "vectors,ROIVec,logical-method", "vectors,ROIVec,missing-method", "vectors,ROIVec,numeric-method", "vectors,SparseNeuroVec,missing-method" ] }, { "page": "vols-methods", "title": "Extract an ordered series of 3D volumes.", "topics": [ "vols", "vols,NeuroVec,missing-method", "vols,NeuroVec,numeric-method" ] }, { "page": "volume_labels-methods", "title": "Get per-volume labels for a 'NeuroVec'.", "topics": [ "volume_labels", "volume_labels,NeuroVec-method" ] }, { "page": "voxels-methods", "title": "extract voxel coordinates", "topics": [ "voxels", "voxels,Kernel-method" ] }, { "page": "which_dim-methods", "title": "Find Dimensions of a Given Axis", "topics": [ "which_dim", "which_dim,NeuroSpace,NamedAxis-method" ] }, { "page": "write_elements-methods", "title": "Write a sequence of elements from an input source", "topics": [ "write_elements", "write_elements,BinaryWriter,numeric-method" ] }, { "page": "write_vec-methods", "title": "Write a 4d image vector to disk", "topics": [ "write_vec", "write_vec,NeuroHyperVec,character,character,missing-method", "write_vec,NeuroHyperVec,character,missing,character,ANY-method", "write_vec,NeuroHyperVec,character,missing,character-method", "write_vec,NeuroHyperVec,character,missing,missing-method", "write_vec,NeuroVec,character,character,missing-method", "write_vec,NeuroVec,character,missing,character,ANY-method", "write_vec,NeuroVec,character,missing,character-method", "write_vec,NeuroVec,character,missing,missing-method", "write_vec,ROIVec,character,missing,missing-method" ] }, { "page": "write_vol-methods", "title": "Write a 3d image volume to disk", "topics": [ "write_vol", "write_vol,ClusteredNeuroVol,character,missing,missing-method", "write_vol,NeuroVol,character,character,missing-method", "write_vol,NeuroVol,character,missing,character-method", "write_vol,NeuroVol,character,missing,missing-method", "write_vol,ROIVol,character,character,missing-method" ] } ], "_readme": "https://github.com/bbuchsbaum/neuroim2/raw/HEAD/README.md", "_rundeps": [ "assertthat", "bigassertr", "bigparallelr", "bigstatsr", "bit", "cachem", "cli", "codetools", "cowplot", "cpp11", "dbscan", "deflist", "digest", "doParallel", "farver", "fastmap", "ff", "flock", "foreach", "future", "future.apply", "generics", "ggplot2", "globals", "glue", "gtable", "isoband", "iterators", "labeling", "lattice", "lifecycle", "listenv", "magrittr", "Matrix", "memoise", "mmap", "parallelly", "patchwork", "pillar", "pkgconfig", "ps", "purrr", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppParallel", "RhpcBLASctl", "rlang", "rmio", "RNifti", "RNiftyReg", "RSpectra", "S7", "scales", "stringi", "stringr", "tibble", "utf8", "vctrs", "viridisLite", "withr" ], "_sysdeps": [ { "shlib": "libz", "package": "zlib1g", "headers": "zlib1g-dev", "source": "zlib", "version": "1:1.3.dfsg+really1.3.1-1ubuntu3.1", "name": "zlib", "homepage": "http://zlib.net/", "description": "compression library - runtime" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_vignettes": [ { "source": "large-data.Rmd", "filename": "large-data.html", "title": "Large data", "engine": "knitr::rmarkdown", "headings": [ "What each backend costs", "The number that actually decides it", "The ladder", "What object.size() does not see", "Dropping to parcels", "Choosing", "Where to go next" ], "created": "2026-08-08 21:24:01", "modified": "2026-10-03 17:37:57", "commits": 5 }, { "source": "neuroim2.Rmd", "filename": "neuroim2.html", "title": "neuroim2: a tour", "engine": "knitr::rmarkdown", "headings": [ "Look at an image", "From millimetres to voxels", "Add a time axis", "Summarise a region", "Make a result and write it out", "Where to go next" ], "created": "2026-08-08 21:24:01", "modified": "2026-10-03 17:37:57", "commits": 5 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