| Anatomical parser constructor | anat_parser |
| Coerce to a BIDS URI object | as_bids_uri as_bids_uri.bids_uri as_bids_uri.character |
| Basic BIDS Compliance Checks | bids_check_compliance |
| Build a custom BIDS datatype spec | bids_datatype_spec |
| Parse BIDS entities from paths into a tibble | bids_entities |
| Create a specialized heatmap visualization of BIDS data | bids_heatmap |
| Build or retrieve a persistent file index for a BIDS project | bids_index |
| BIDS filename parsers using regex | bids_parser |
| Create a BIDS Project Object | bids_project |
| Create a lightweight text report for a BIDS project | bids_report |
| Assemble lightweight report data for a BIDS project | bids_report_data |
| Load and cache the BIDS schema | bids_schema |
| List available BIDS schema versions | bids_schema_versions |
| Access a single subject from a BIDS project | bids_subject bids_subject.bids_project |
| Summarize a BIDS dataset | bids_summary |
| Apply a transformation to BIDS files | bids_transform |
| Construct a BIDS URI object | bids_uri |
| Get the BIDS version of a dataset | bids_version bids_version.bids_dataset_description bids_version.bids_project bids_version.mock_bids_project |
| Retrieve a brain mask for a subject | brain_mask brain_mask.bids_project |
| Build Subject Graph Structure | build_subject_graph build_subject_graph.bids_project build_subject_graph.mock_bids_project |
| Check and clean confound tables | check_confounds clean_confounds |
| Check Functional Scans in a BIDS Project | check_func_scans |
| Clear Example BIDS Dataset Cache | clear_example_bids_cache |
| Get confound files from a BIDS project | confound_files confound_files.bids_project confound_files.mock_bids_project |
| Convenience confound sets for fMRIPrep | confound_set |
| Confound denoising strategies | confound_strategy |
| Create a Mock BIDS Project Object | create_mock_bids |
| Create a preprocessing mask from BIDS data | create_preproc_mask |
| Create a binary brain mask from preprocessed scans | create_preproc_mask.bids_project |
| Create Preprocessing Mask (Mock Implementation) | create_preproc_mask.mock_bids_project |
| Create a simple smoothing transformer | create_smooth_transformer |
| Get the dataset_description object from a BIDS project | dataset_description dataset_description.bids_project |
| Get fields from a BIDS dataset description | dataset_name dataset_type |
| Decode BIDS entities back into a filename | decode_bids_entities |
| Query derivative files from a BIDS project | derivative_files |
| List derivative pipelines in a BIDS project | derivative_pipelines |
| Encode a string into a BIDS key-value list | encode encode.character |
| Get event files from a BIDS project | event_files event_files.bids_project event_files.mock_bids_project |
| Find File Pairs in a BIDS Project | file_pairs |
| Get "flat" representation of BIDS Project | flat_list flat_list.bids_project |
| Fieldmap parser constructor | fmap_parser |
| fMRIPrep anatomical parser constructor | fmriprep_anat_parser |
| fMRIPrep functional parser constructor | fmriprep_func_parser |
| Functional parser constructor | func_parser |
| Get functional scans from a BIDS project | func_scans func_scans.mock_bids_project |
| Get Functional Scans from a BIDS Project | func_scans.bids_project |
| Generate a parser from a spec | gen_parser |
| Download Example BIDS Dataset | get_example_bids_dataset |
| Resolve metadata for a BIDS file | get_metadata get_metadata.bids_project |
| Get Repetition Time (TR) from a sidecar JSON | get_repetition_time |
| Infer TR (Repetition Time) from a BOLD file or sidecar | infer_tr infer_tr.character |
| Test whether an object is a BIDS URI | is_bids_uri |
| List available confound sets | list_confound_sets |
| List available confound strategies | list_confound_strategies |
| List registered BIDS datatypes | list_datatypes |
| List Contents of Packed BIDS Archive | list_pack_bids |
| Load All Event Files | load_all_events load_all_events.bids_project |
| Query Mask Files from a BIDS Project | mask_files mask_files.bids_project mask_files.mock_bids_project |
| Get the number of volumes in functional scans | n_volumes n_volumes.bids_project n_volumes.character |
| Pack BIDS Project with Stub or Downsampled Imaging Files | pack_bids |
| Parse a file-name into BIDS components | parse |
| Get participants from a BIDS project | participants participants.bids_project |
| Get Participants from Mock BIDS Project | participants.mock_bids_project |
| Plot a comprehensive visual overview of a BIDS project | plot_bids |
| Plot PCA confounds | plot.bids_confounds |
| Plot a BIDS project as a dendrogram | plot.bids_project plot.mock_bids_project |
| Get preprocessed functional MRI scans | preproc_scans |
| Get preprocessed scans from a BIDS project | preproc_scans.bids_project |
| Print Mock BIDS Project Summary | print.mock_bids_project |
| Query files in BIDS structure with explicit semantics | query_files query_files.bids_project query_files.mock_bids_project |
| Read Confound Files from a BIDS Project | read_confounds |
| Read confound files | read_confounds.bids_project |
| Read Confound Files (Mock Implementation) | read_confounds.mock_bids_project |
| Read the dataset_description.json for a BIDS project | read_dataset_description read_dataset_description.bids_project read_dataset_description.character |
| Read Event Files from a BIDS Project | read_events |
| Read event files from a BIDS project | read_events.bids_project |
| Read Event Files from Mock BIDS Project | read_events.mock_bids_project |
| Read in a set of four-dimensional functional scans | read_func_scans.bids_project |
| Read participants.tsv as a typed tabular object | read_participants read_participants.bids_project read_participants.character |
| Read preprocessed functional MRI scans from a BIDS project | read_preproc_scans.bids_project |
| Read a scans.tsv file for a subject | read_scans_tsv read_scans_tsv.bids_project |
| Read a sessions.tsv file for a subject | read_sessions_tsv read_sessions_tsv.bids_project |
| Read sidecar JSON files and return metadata as a tidy tibble | read_sidecar |
| Register a custom BIDS datatype | register_datatype |
| Resolve a BIDS URI to a local or remote path | resolve_bids_uri resolve_bids_uri.bids_uri resolve_bids_uri.character |
| Search files in BIDS structure | search_files search_files.bids_project search_files.mock_bids_project |
| Get sessions from a BIDS project | sessions sessions.bids_project |
| Get Sessions from Mock BIDS Project | sessions.mock_bids_project |
| Get the sidecar metadata attached to a tabular BIDS object | sidecar sidecar.bids_tabular |
| Query Surface Files from a BIDS Project | surface_files surface_files.bids_project surface_files.mock_bids_project |
| Get tasks from a BIDS project | tasks tasks.bids_project |
| Get Tasks from Mock BIDS Project | tasks.mock_bids_project |
| Query Transform Files from a BIDS Project | transform_files transform_files.bids_project transform_files.mock_bids_project |
| Unregister a custom BIDS datatype | unregister_datatype |
| Create a tidy run-level variables table | variables_table |