Package: neurosurf
Type: Package
Title: Data Structures and Visualization for Surface-Based Neuroimaging
        Data
Version: 0.1.0
Authors@R: c(
    person(c("Bradley", "R"), "Buchsbaum", role = c("aut", "cre", "cph"), email = "brad.buchsbaum@gmail.com"))
Description: A comprehensive toolkit for working with surface-based
        neuroimaging data represented as triangle meshes. The package
        provides classes and methods for creating, manipulating, and
        visualizing 3D surface geometries (e.g., cortical surfaces),
        with support for various file formats including FreeSurfer and
        GIFTI. Key features include: surface smoothing, curvature
        computation, neighborhood graph construction, geodesic distance
        calculations, searchlight analysis for surface-based machine
        learning, and interactive 3D visualization via HTMLWidgets. The
        package facilitates advanced surface-based analyses through
        specialized data structures for representing surface geometry
        and associated functional data.
Imports: Matrix, igraph, rgl, assertthat, digest, neuroim2, colorplane,
        FNN, readr, stringr, plyr, Rvcg, methods, gplots, gifti,
        htmlwidgets, deflist, fastmap, crayon, png, Rcpp
LinkingTo: Rcpp, RcppArmadillo, roptim
License: GPL (>= 2)
RoxygenNote: 7.3.3
Language: en-US
Collate: 'all_generic.R' 'all_class.R' 'Arith.R' 'IO.R' 'ROI.R'
        'RcppExports.R' 'Searchlight.R' 'curv.R' 'example_helpers.R'
        'fetch_surfaces.R' 'gaussian_splat.R' 'geodesic.R' 'geometry.R'
        'neighborhood.R' 'neuro_surface.R' 'neurosurf.R'
        'roi_boundaries.R' 'sdf_alignment.R' 'snapshot_surface.R'
        'spec.R' 'surface_montage.R' 'surface_plot.R' 'surface_set.R'
        'surfwidget.R' 'testdata.R' 'view_surface.R' 'vol_to_surf.R'
        'vol_to_surf_sdf.R' 'zzz.R'
Suggests: callr, testthat, covr, bench, knitr, rmarkdown, webshot2,
        ggplot2, viridis, albersdown, rappdirs
URL: https://github.com/bbuchsbaum/neurosurf
BugReports: https://github.com/bbuchsbaum/neurosurf/issues
VignetteBuilder: knitr
Encoding: UTF-8
Config/Needs/website: albersdown
Config/pak/sysreqs: cmake libfreetype6-dev libglpk-dev libglu1-mesa-dev
        make texlive libicu-dev libpng-dev libuv1-dev libxml2-dev
        libgl1-mesa-dev libx11-dev zlib1g-dev
Repository: https://bbuchsbaum.r-universe.dev
Date/Publication: 2026-06-03 16:32:25 UTC
RemoteUrl: https://github.com/bbuchsbaum/neurosurf
RemoteRef: HEAD
RemoteSha: 1a150090205b36071ae19f2c8ab06f30139ba5f9
NeedsCompilation: yes
Packaged: 2026-06-24 01:49:51 UTC; root
Author: Bradley R Buchsbaum [aut, cre, cph]
Maintainer: Bradley R Buchsbaum <brad.buchsbaum@gmail.com>